Software Development

Software for the simulation, analysis and visualization is developed in the Computational Systems Biochemistry group.

NameDescriptionDevelopersProject Page
MetAnnoGenThe computer program MetAnnoGen facilitates the reconstruction of metabolic networks. It is an information system to collect and manage data from different databases and scientific literature in order to generate a metabolic network of biochemical reactions that can be subjected to further computational analyses. Dr. Christoph GilleLink
FASIMUFlexible software for flux-balance computation series in large metabolic networks.Dr. Andreas HoppeLink
FluxVizCytoscape Plugin for flux visualizationMatthias KönigLink
SBMLReader 2Cytoscape Plugin for SBML loadingMatthias KönigLink