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Dr. Andrean Goede
Computational Systems Biochemistry Group
phone +49 30 450528-197 |
charite.de
Research Interests
- Protein structures
- Protein modelling "CASP"
- Docking
- Drugs and ligands
- Molecular density
- Membrane proteins
- Mass spectrometry
- Algorithms
- Liver function test - methacetin kinetics
Selected Publications
Rose A, Goede A, Hildebrand PW. (2010) MPlot--a server to analyze and visualize tertiary structure contacts and geometrical features of helical membrane proteins. Nucleic Acids Res., 38(Web Server issue):W602-8. [PubMed]
Binder B, Goede A, Berndt N, Holzhütter HG. (2009) A conceptual mathematical model of the dynamic self-organisation of distinct cellular organelles. PLoS One, 4(12):e8295. [PubMed]
Hildebrand PW, Goede A, Bauer RA, Gruening B, Ismer J, Michalsky E, Preissner R. (2009) SuperLooper - a prediction server for the modeling of loops in globular and membrane proteins. Nucl. Acids Res. 37, Web Server issue, W571-W574 [PubMed]
Rose A, Lorenzen S, Goede A, Gruening B, Hildebrand PW. (2009) RHYTHM - a server to predict the orientation of transmembrane helices in channels and membrane-coils. Nucl. Acids Res. 37, Web Server issue, W575-W580 [PubMed]
Rother K, Hildebrand PW, Goede A, Gruening B, Preissner R. (2008) Voronoia: analyzing packing in protein structures. Nucleic Acids Res., 37(Database issue):D393-5. [PubMed]
Scheerer P, Heck M, Goede A, Park JH, Choe HW, Ernst OP, Hofmann KP, Hildebrand PW. (2009) Structural and kinetic modeling of an activating helix switch in the rhodopson-transducin interface. PNAS 106(26):10660-5 [PubMed]
Bauer RA, Bourne PE, Formella A, Frömmel C, Gille C, Goede A, Guerler A, Hoppe A, Knapp EW, Pöschel T, Wittig B, Ziegler V, Preissner R. (2008) Superimpose: a 3D structural superposition server. Nucleic Acids Res., 36(Web Server issue):W47-54. [PubMed]
Hildebrand PW, Günther S, Goede A, Forrest L, Frömmel C, Preissner R. (2008) Hydrogen-bonding and packing features of membrane proteins: functional implications. Biophys J., 94(6):1945-53. [PubMed]
Goede A, Michalsky E, Schmidt U, Preissner R. (2006) SuperMimic--fitting peptide mimetics into protein structures. BMC Bioinformatics., 7:11. [PubMed]
Günther S, Senger C, Michalsky E, Goede A, Preissner R. (2006) Representation of target-bound drugs by computed conformers: implications for conformational libraries. BMC Bioinformatics., 7:293. [PubMed]
Hildebrand PW, Lorenzen S, Goede A, Preissner R. (2006) Analysis and prediction of helix-helix interactions in membrane channels and transporters. Proteins., 64(1):253-62. [PubMed]
Rother, K., Dunkel, M., Michalsky, E., Trissl, S., Goede, A., Leser, U., Preissner, R. (2006) A structural keystone for drug design. Journal of Integrative Bioinformatics