How to use the program?

 

Select cellular function.

You may choose the cellular function with the choice menu. All proteins which
are a member of this group are displayed.
 

 
 
 

Choose level of neighboring distance.

The level of neighboring distance may be defined.
 

 

Clicking on a protein will select the protein (red) and all its neighbors (green) within the selected distance.
All other proteins appear in yellow.
Double clicking switches of all non neighbors.
 
 

Speed up relaxation.

In order to speed up the relaxation process, the graphical update may be turned of during
the relaxation process. If the calculation is near a relaxed state, the option switches
of automatically.

 
 

Modify the graph.

The relaxation process is turned off in the freeze state. One may rearrange the
result simply moving proteins with the mouse. This has no effect on the selection
with regard to neighbors and calculating the neighbors.
IMPORTANT: If you want to change the appearance of the graph, you should do
this always in the freezed mode.
 

 
 

Show detailed classification.

In order to see all the functional classification of the proteins you may turn on
the show-function check box. The keys of the groups will be displayed.
 

 
 
 

Scramble.

Use the scramble button to scramble all proteins and start an new relaxation.